The PINC Summer Program trained 15 SFSU undergraduate biology students in computer programming, technical manuscript literacy, scientific presentations, and applied research. With the guidance of near-peer mentors, the students worked in collaborative teams to learn how to program in either python or R, and then applied their skills to an original scientific research project. Research topics included
Characterizing the Relationships Between Classroom Demographics, Survey Responses & Grades Using R
Modeling the evolution of alternative splicing rates
Predicting the Evolution of PrEP Resistant HIV
Quantifying relationship of google searches and STI rates
The program culminated in the students presenting their computational research projects in the poster session at the SFSU Summer Research Symposium.
Students were grouped in teams of 3-5 students based on their weekly availability. Each student team worked closely with a near-peer mentor 8 hours/week, and under the guidance of a faculty member (or two) who worked directly with the group one hour per week. The participating students were all busy with classes, work, family care, and other obligations, so students were explicitly expected not to work on the summer program outside of the mentored hours (though some did).
The first 6 weeks, students focused on learning to program through free online courses, reading the scientific literature on their research topic, and practicing presenting to each other. Some teams also started to play with data or “mini projects” relevant to their ultimate research projects. The next 2 weeks, students delved into their research, be it simulations or data analysis. The last week, students created posters representing their research and practiced their presentations. At the end of each week students wrote brief reflections on their experience and evaluations of their progress and the program
We held a weekly all-staff meeting to troubleshoot, respond to weekly student evaluations, and coordinate the ongoing program and projects. To keep the program running smoothly, the mentors and faculty used a slack group for quick daily questions and ongoing updates. Individual mentors also communicated (via slack or email) frequently with their advising faculty to answer specific programming and research questions.
Each team of a mentor and students organically came up with their own communication structures as well. Groups chose text, slack, or email to stay in touch.
Pleuni and I had a great time working with students and mentors and watching their rapid development as programmers over the summer!
We are currently gathering data to understand how the program impacted students skills, motivation, and preparation for careers in science. Look for a full description soon!
Faculty organizers and advisors: Pleuni Pennings and Rori Rohlfs
Coordinating mentor: Kadie Williams
Near-peer mentors: Sita Chamdrasekaran, Dwayne Evans, Ryan Ferguson, Kimmie Tsui
Contributing faculty advisor: Sepideh Modrek
The PINC mentors are graduate students in the computer science department who meet weekly with small groups of PINC students. At the end of the semester, Dr Kaz Okada treated the mentors and Dr Pleuni Pennings to a lunch.
Drs Rori Rohlfs and Pleuni Pennings are running a summer-research-coding program this summer.
We do research on different topics related to genetics, evolution and HIV. There are undergraduate and graduate students in our labs who do research projects by themselves or in teams. Most of this work is on a voluntary basis. Sometimes it is possible to get SFSU credits for doing research.
If you are unsure whether you can afford to do this because you need to work, please apply anyways, and we’ll try to find a way to support you!
If you are interested to be part of a lab for the summer or the academic year, please let us know by filling out this form.
PINC (Promoting Inclusivity In Computing) is a unique educational opportunity at San Francisco State University designed to lower the barriers that biology students experience in learning computer science skills. No prior computer science experience is needed to join, and all classes in the series are taken with fellow biology students. Students are also supported by faculty mentors and weekly tutoring by CS graduate students. Completion of the five courses (15 units total) in the PINC curriculum allows students to earn an “Emphasis in Computer Science”.
The PINC Curriculum (15 units):
CSc 306 – Computing for Biologists
CSc 220 – Data Structures and Algorithms
CSc 307 – Web and Databases for Biologists
CSc 690 – Two special topic courses, lectures & independent research project
We are looking for motivated students to apply and join our Fall 2017 cohort! The application, due APRIL 28, 2017 is available at the link below:
On Thursday, April 20, PINC will be having a program-wide meeting for faculty, CS graduate student mentors, and students from the Fall 2016 and Spring 2017 cohorts. It will be held at LIB 121 from 2:30-4:30 pm. We will be discussing the PINC program’s plans for the next year and the content and structure of the CSc 690 research course. Refreshments will be provided!
PINC Program-Wide Meeting
When: Thursday April 20, 2017 from 2:30-4:30 PM Where: LIB 121
One of our students (Kimmie Richardson-Kubitsky-Tsui) wrote that “It was very inspiring to listen to fellow women speak about their triumphs as they’ve navigated their personal and often challenging paths to success.”
The deadline for applying to the PINC program for the spring of 2017 is extended until December 21st.
Students who cannot commit to the entire program are welcome to apply!
PINC (Promoting Inclusivity In Computing) is a unique educational opportunity at San Francisco State University designed to lower the barriers that biology students experience in learning computer science skills.
A two year program consisting of 15 units of computer science coursework that will expose students to computing topics such as: web design, mobile app development, data structures, and algorithms.
Students take courses with other biology students and courses are uniquely tailored to the PINC Program.
In addition, students are mentored weekly in small groups headed by Computer Science graduate students.
Students earn an Emphasis in Computer Science after successful completion of the curriculum.
NO prior computer science background needed!
Students receive a laptop and Android phone on loan for the duration of the program.
We will be celebrating the achievements of our first cohort (Fall 2016) and look forward to meeting the family, friends, and significant others that have supported our students on their educational journey. In addition, the PINC professors, chairs of the Biology and the Computer Science department, and guests from academia and industry will be in attendance. Prospective PINC students are encouraged and invited to attend to learn more about our program.
Food and refreshments will be provided, but feel free to bring an appetizer or dessert! There is a playground for children and indoor/outdoor seating. Street parking is available on Denslowe and Stonecrest Drive.
Email firstname.lastname@example.org to RSVP. All are welcome!
PINC 1st Social Gathering Time: Saturday, December 3 from 1:00 PM to 5:00 PM Location: Junipero Serra Playground and Clubhouse
300 Stonecrest Drive San Francisco, CA 94132 Map:
Three PINC students (Kimmie Richardson-Kubitsky-Tsui, Darleen Franklin and Olivia Pham) and Kadie Williams from the CoDE Lab taught a coding workshop for middle school girls as part of the Expanding Your Horizons day at SFSU.
The girls learned to make an app for an Android phone.
PINC is designed as a program for biology majors, and consists of 15 units of computer science coursework (5 courses spread over 4 semesters) that will allow the students to earn an “Emphasis in Computer Science.”
We are looking for students who want to start the PINC program in the spring of 2017. The first class will be taught Tue/ Thu 12:35 – 1:50.
If you have any questions about the program, please contact Prof. Ilmi Yoon (email@example.com), Prof. Pleuni Pennings (firstname.lastname@example.org, office hours after Thanksgiving: Tue and Fri 3-4 PM HH 673) or Prof. Carmen Domingo (email@example.com).